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Lj4g3v2225720.1

Overview

Field Value
Gene ID Lj4g3v2225720
Transcript ID Lj4g3v2225720.1
Lotus japonicus genome version MG20 v3.0
Description disrupted meiotic cDNA 1 [Pseudoroegneria stipifolia] gi|281704340|gb|ADA77115.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF50249
1 44 44 6.68E-06
IPR012340
Gene3D
G3DSA:2.40.50.140
1 44 44 2.30E-08 –
Pfam
PF04057
1 44 44 5.70E-09
IPR007199
Gene3D
G3DSA:3.40.50.300
49 123 75 3.00E-14
IPR027417
Pfam
PF08423
56 122 67 1.40E-18
IPR013632
SUPERFAMILY
SSF52540
59 138 80 3.90E-07
IPR027417
PANTHER
PTHR22942:SF30
63 120 58 7.30E-24 –
PANTHER
PTHR22942
63 120 58 7.30E-24 –
Gene3D
G3DSA:3.40.50.1460
196 316 121 4.30E-06
IPR029030
Pfam
PF00656
198 315 118 2.90E-10 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006260
Biological process DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj4g3v2225720.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2225720.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.