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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2249140 |
| Transcript ID | Lj4g3v2249140.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cicer arietinum] gi|502150719|ref|XP_004508090.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | – | – | |
| SignalP | 1 | 19 | 19 | – | – | |
| PANTHER | 10 | 474 | 465 | 2.90E-300 | – | |
| PANTHER | 10 | 474 | 465 | 2.90E-300 | – | |
| MobiDBLite | 46 | 81 | 36 | – | – | |
| Gene3D | 108 | 386 | 279 | 2.20E-05 | ||
| ProSiteProfiles | 131 | 165 | 35 | 10.019 | ||
| Pfam | 134 | 163 | 30 | 0.016 | ||
| TIGRFAM | 134 | 166 | 33 | 1.90E-04 | ||
| ProSiteProfiles | 166 | 200 | 35 | 10.72 | ||
| TIGRFAM | 169 | 196 | 28 | 1.50E-06 | ||
| Pfam | 169 | 213 | 45 | 4.00E-13 | ||
| ProSiteProfiles | 202 | 236 | 35 | 9.306 | ||
| Pfam | 236 | 282 | 47 | 3.70E-09 | ||
| ProSiteProfiles | 237 | 272 | 36 | 9.734 | ||
| TIGRFAM | 239 | 274 | 36 | 7.40E-08 | ||
| ProSiteProfiles | 273 | 307 | 35 | 9.975 | ||
| TIGRFAM | 276 | 307 | 32 | 4.10E-04 | ||
| ProSiteProfiles | 308 | 342 | 35 | 8.331 | ||
| TIGRFAM | 311 | 339 | 29 | 6.60E-05 | ||
| Pfam | 311 | 338 | 28 | 9.10E-04 | ||
| ProSiteProfiles | 343 | 377 | 35 | 9.273 | ||
| Pfam | 344 | 391 | 48 | 1.00E-07 | ||
| TIGRFAM | 346 | 378 | 33 | 4.60E-04 | ||
| ProSiteProfiles | 378 | 412 | 35 | 6.939 | ||
| ProSiteProfiles | 413 | 447 | 35 | 10.994 | ||
| Pfam | 413 | 459 | 47 | 1.60E-12 | ||
| TIGRFAM | 417 | 448 | 32 | 5.10E-07 | ||
| Gene3D | 446 | 466 | 21 | 2.20E-05 | ||
| ProSiteProfiles | 448 | 485 | 38 | 6.982 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v2249140.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2249140.1, powered by CORGI.
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