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Lj4g3v2263890.1

Overview

Field Value
Gene ID Lj4g3v2263890
Transcript ID Lj4g3v2263890.1
Lotus japonicus genome version MG20 v3.0
Description GPN-loop GTPase [Medicago truncatula] gi|357443887|ref|XP_003592221.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 39 39 – –
PANTHER
PTHR21231:SF8
26 359 334 4.40E-208
IPR030230
Gene3D
G3DSA:1.20.120.140
26 70 45 3.90E-04 –
PANTHER
PTHR21231
26 359 334 4.40E-208
IPR004130
Coils
Coil
28 48 21 – –
SUPERFAMILY
SSF52540
65 303 239 3.21E-44
IPR027417
CDD
cd00882
67 302 236 2.37E-05 –
Pfam
PF03029
68 307 240 1.70E-82
IPR004130
Gene3D
G3DSA:3.40.50.300
71 313 243 2.70E-22
IPR027417
Coils
Coil
310 330 21 – –
MobiDBLite
mobidb-lite
344 401 58 – –
Coils
Coil
362 382 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj4g3v2263890.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2263890.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.