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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2289110 |
| Transcript ID | Lj4g3v2289110.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable polygalacturonase-like [Glycine max] gi|356519942|ref|XP_003528627.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 1 | 1 | – | – | |
| Phobius | 2 | 11 | 10 | – | – | |
| Phobius | 12 | 19 | 8 | – | – | |
| Phobius | 20 | 457 | 438 | – | – | |
| SUPERFAMILY | 29 | 431 | 403 | 3.46E-89 | ||
| PANTHER | 33 | 457 | 425 | 0 | – | |
| PANTHER | 33 | 457 | 425 | 0 | – | |
| Gene3D | 35 | 418 | 384 | 5.50E-97 | ||
| Pfam | 40 | 133 | 94 | 1.80E-07 | ||
| Pfam | 136 | 417 | 282 | 6.00E-31 | ||
| SMART | 184 | 206 | 23 | 1500 | ||
| SMART | 234 | 255 | 22 | 870 | ||
| SMART | 268 | 290 | 23 | 1800 | ||
| SMART | 296 | 317 | 22 | 360 | ||
| SMART | 325 | 346 | 22 | 3800 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of Lj4g3v2289110.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2289110.1, powered by CORGI.
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