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IPR024535

Source: InterPro

Description

IPR024535 is a Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domain.

<p>This domain posses a β-helical structure like pectate lyase, found in a varied group of proteins including D-mannuronate C5-epimerases and glycosyl hydrolases from GH family 28. This domain is also found in Non-secreted LysM effector LysM15 and LysM19 from Penicillium expansum, which might be involved in manipulation of host defenses for successful infection [[cite:PUB00154508]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 17

Transcript Name Description Predicted domains Domain count
Lj0g3v0198719.1
– PREDICTED: probable polygalacturonase-like [Glycine max] gi|356535839|ref|XP_003536450.1|
Domains
16
Lj4g3v2289110.1
– PREDICTED: probable polygalacturonase-like [Glycine max] gi|356519942|ref|XP_003528627.1|
Domains
18
Lj4g3v2989010.1
– PREDICTED: probable polygalacturonase-like isoform X3 [Cicer arietinum] gi|502139201|ref|XP_004503680.1|
Domains
16
Lj6g3v1392550.1
– Polygalacturonase QRT3 [Medicago truncatula] gi|357449209|ref|XP_003594881.1|
Domains
17
Lj6g3v1412750.1
– Polygalacturonase QRT3 [Medicago truncatula] gi|357449209|ref|XP_003594881.1|
Domains
17
LotjaGi2g1v0124100.1
– Pectin lyase superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|C6T824|C6T824_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0124100
Domains
16
LotjaGi3g1v0179900.1
– Pectin lyase superfamily protein; TAIR: AT3G48950.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|C6T824|C6T824_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0179900
Domains
16
LotjaGi3g1v0185600.2
– Pectin lyase superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|C6T824|C6T824_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0185600
Domains
16
LotjaGi3g1v0185700.1
– Pectin lyase superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|C6T824|C6T824_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0185700
Domains
17
LotjaGi3g1v0185700.2
– Pectin lyase superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|C6T824|C6T824_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0185700
Domains
16
LotjaGi4g1v0337400.2
– Pectin lyase-like superfamily protein; TAIR: AT3G16850.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|A0A0B2P5F6|A0A0B2P5F6_GLYSO Putative polygalacturonase; Found in the gene: LotjaGi4g1v0337400
Domains
14
LotjaGi4g1v0429500.1
– Pectin lyase-like superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|I3SCH0|I3SCH0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0429500
Domains
16
LotjaGi4g1v0429500.2
– Pectin lyase-like superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|I3SCH0|I3SCH0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0429500
Domains
16
LotjaGi5g1v0247900.2
– Pectin lyase-like superfamily protein; TAIR: AT3G16850.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|A0A0R0KR00|A0A0R0KR00_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0247900
Domains
15
LotjaGi5g1v0247900.3
– Pectin lyase-like superfamily protein; TAIR: AT3G16850.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|A0A0R0KR00|A0A0R0KR00_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0247900
Domains
15
LotjaGi5g1v0247900.4
– Pectin lyase-like superfamily protein; TAIR: AT3G16850.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|A0A0R0KR00|A0A0R0KR00_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0247900
Domains
17
LotjaGi6g1v0244400.1
– Polygalacturonase QRT3; TAIR: AT4G20050.5 Pectin lyase-like superfamily protein; Swiss-Prot: sp|O49432|QRT3_ARATH Polygalacturonase QRT3; TrEMBL-Plants: tr|I1L157|I1L157_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0244400
Domains
14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 5.88