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Lj4g3v2291340.1

Overview

Field Value
Gene ID Lj4g3v2291340
Transcript ID Lj4g3v2291340.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pectinesterase/pectinesterase inhibitor-like [Cicer arietinum] gi|502150932|ref|XP_004508195.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 32 32 – –
Phobius
CYTOPLASMIC_DOMAIN
1 14 14 – –
PANTHER
PTHR31707:SF13
12 578 567 0 –
PANTHER
PTHR31707
12 578 567 0 –
Phobius
TRANSMEMBRANE
15 36 22 – –
TMHMM
TMhelix
17 36 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
37 587 551 – –
TIGRFAM
TIGR01614
44 207 164 6.80E-17
IPR006501
SMART
SM00856
52 204 153 8.60E-20
IPR006501
Gene3D
G3DSA:1.20.140.40
59 207 149 1.10E-24
IPR006501
SUPERFAMILY
SSF101148
60 207 148 3.01E-25
IPR006501
Pfam
PF04043
60 204 145 1.40E-16
IPR006501
CDD
cd15798
60 210 151 3.58E-36 –
SUPERFAMILY
SSF51126
259 574 316 2.15E-90
IPR011050
Gene3D
G3DSA:2.160.20.10
259 573 315 6.40E-101
IPR012334
Pfam
PF01095
261 553 293 9.90E-115
IPR000070
ProSitePatterns
PS00800
286 305 20 –
IPR018040
ProSitePatterns
PS00503
405 414 10 –
IPR033131

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004857
Molecular function Enzyme inhibitor activity Binds to and stops, prevents or reduces the activity of an enzyme.
Subterm of
GO:0030599
Molecular function Pectinesterase activity Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
Subterm of
GO:0042545
Biological process Cell wall modification The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj4g3v2291340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2291340.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.