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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2374800 |
| Transcript ID | Lj4g3v2374800.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g36980, mitochondrial-like [Glycine max] gi|356519999|ref|XP_003528655.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 136 | 131 | 0 | – | |
| PANTHER | 6 | 136 | 131 | 0 | – | |
| ProSiteProfiles | 7 | 37 | 31 | 5.689 | ||
| Gene3D | 35 | 60 | 26 | 1.20E-08 | ||
| ProSiteProfiles | 38 | 72 | 35 | 10.676 | ||
| Pfam | 38 | 85 | 48 | 6.10E-09 | ||
| TIGRFAM | 40 | 73 | 34 | 1.20E-04 | ||
| ProSiteProfiles | 73 | 107 | 35 | 5.053 | ||
| ProSiteProfiles | 108 | 138 | 31 | 7.815 | ||
| Pfam | 113 | 137 | 25 | 3.20E-04 | ||
| Gene3D | 127 | 206 | 80 | 1.20E-08 | ||
| ProSiteProfiles | 139 | 169 | 31 | 8.616 | ||
| Pfam | 141 | 169 | 29 | 0.003 | ||
| PANTHER | 168 | 583 | 416 | 0 | – | |
| PANTHER | 168 | 583 | 416 | 0 | – | |
| ProSiteProfiles | 170 | 204 | 35 | 9.756 | ||
| Pfam | 172 | 216 | 45 | 6.40E-11 | ||
| TIGRFAM | 173 | 200 | 28 | 1.00E-06 | ||
| ProSiteProfiles | 205 | 239 | 35 | 6.511 | ||
| Gene3D | 241 | 344 | 104 | 1.20E-08 | ||
| ProSiteProfiles | 271 | 301 | 31 | 7.684 | ||
| Pfam | 273 | 299 | 27 | 0.0082 | ||
| TIGRFAM | 273 | 303 | 31 | 0.0016 | ||
| ProSiteProfiles | 302 | 336 | 35 | 10.15 | ||
| Pfam | 304 | 333 | 30 | 9.90E-07 | ||
| TIGRFAM | 304 | 337 | 34 | 6.90E-06 | ||
| ProSiteProfiles | 372 | 402 | 31 | 5.009 | ||
| Pfam | 402 | 449 | 48 | 4.30E-11 | ||
| ProSiteProfiles | 403 | 437 | 35 | 12.43 | ||
| TIGRFAM | 405 | 439 | 35 | 1.10E-07 | ||
| ProSiteProfiles | 438 | 468 | 31 | 7.947 | ||
| Gene3D | 540 | 570 | 31 | 1.20E-08 | ||
| ProSiteProfiles | 542 | 576 | 35 | 9.032 | ||
| Pfam | 546 | 574 | 29 | 0.023 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v2374800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2374800.1, powered by CORGI.
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