Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj4g3v2691870.1

Overview

Field Value
Gene ID Lj4g3v2691870
Transcript ID Lj4g3v2691870.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max] gi|356525975|ref|XP_003531595.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Coils
Coil
5 25 21 – –
MobiDBLite
mobidb-lite
47 73 27 – –
Gene3D
G3DSA:1.10.10.60
62 111 50 1.70E-06
IPR009057
ProSiteProfiles
PS50090
63 118 56 6.899
IPR017877
SMART
SM00717
67 120 54 8.00E-07
IPR001005
Pfam
PF00249
69 110 42 1.10E-07
IPR001005
SUPERFAMILY
SSF46689
69 113 45 1.87E-08
IPR009057
CDD
cd00167
70 112 43 1.05E-05 –
PANTHER
PTHR24078
71 132 62 8.10E-16 –
PANTHER
PTHR24078:SF310
71 132 62 8.10E-16 –
MobiDBLite
mobidb-lite
139 203 65 – –
PANTHER
PTHR24078
189 262 74 8.10E-16 –
PANTHER
PTHR24078:SF310
189 262 74 8.10E-16 –
SUPERFAMILY
SSF46689
200 251 52 2.84E-09
IPR009057
ProSiteProfiles
PS51293
201 256 56 8.604
IPR017884
SMART
SM00717
202 254 53 2.40E-08
IPR001005
Pfam
PF00249
206 248 43 2.50E-07
IPR001005
Gene3D
G3DSA:1.10.10.60
206 251 46 5.00E-06
IPR009057
CDD
cd00167
206 252 47 4.08E-07 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj4g3v2691870.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2691870.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.