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Lj4g3v2742710.1

Overview

Field Value
Gene ID Lj4g3v2742710
Transcript ID Lj4g3v2742710.1
Lotus japonicus genome version MG20 v3.0
Description Histone deacetylase [Medicago truncatula] gi|357519987|ref|XP_003630282.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 31 31 – –
Pfam
PF01425
28 79 52 8.80E-10
IPR023631
Gene3D
G3DSA:3.40.800.20
49 316 268 2.50E-82
IPR023801
Pfam
PF00850
52 281 230 2.10E-70
IPR023801
SUPERFAMILY
SSF52768
56 287 232 6.23E-80 –
PANTHER
PTHR10625
60 318 259 2.70E-97
IPR000286
PANTHER
PTHR10625:SF104
60 318 259 2.70E-97 –
CDD
cd09992
61 282 222 2.68E-114 –
PRINTS
PR01270
94 117 24 1.60E-13
IPR000286
PRINTS
PR01270
128 143 16 1.60E-13
IPR000286
PRINTS
PR01270
212 222 11 1.60E-13
IPR000286

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj4g3v2742710.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2742710.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.