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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000286
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 48 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.186s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0089689.1
n.a. PREDICTED: histone deacetylase 15-like [Cicer arietinum] gi|502151700|ref|XP_004508570.1| chr0 36841632 36853951 +
3 domain predictions
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Lj0g3v0137449.1
n.a. Histone deacetylase 6 isoform 2 [Theobroma cacao] gi|508773583|gb|EOY20839.1| chr0 63073106 63073570 -
2 domain predictions
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Lj0g3v0178909.1
n.a. PREDICTED: histone deacetylase 14-like [Glycine max] gi|356512844|ref|XP_003525125.1| chr0 86811419 86812734 -
3 domain predictions
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Lj0g3v0201999.1
n.a. PREDICTED: histone deacetylase 19-like [Glycine max] gi|356551138|ref|XP_003543935.1| chr0 99952364 99959392 +
3 domain predictions
 –
Lj0g3v0201999.2
n.a. PREDICTED: histone deacetylase 19-like [Glycine max] gi|356551138|ref|XP_003543935.1| chr0 99952364 99959392 +
3 domain predictions
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Lj0g3v0301929.1
n.a. Histone deacetylase [Medicago truncatula] gi|357453211|ref|XP_003596882.1| chr0 156982986 156985905 -
2 domain predictions
 –
Lj0g3v0332349.1
n.a. Histone deacetylase 6 isoform 2 [Theobroma cacao] gi|508773583|gb|EOY20839.1| chr0 173931856 173934734 +
3 domain predictions
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Lj1g3v0051010.1
n.a. n.a. chr1 298762 301185 +
2 domain predictions
 –
Lj1g3v0051020.1
n.a. PREDICTED: histone deacetylase 6-like isoform X1 [Cicer arietinum] gi|502158868|ref|XP_004511307.1| chr1 299072 300559 -
2 domain predictions
 –
Lj1g3v0318630.1
n.a. Histone deacetylase [Medicago truncatula] gi|357461841|ref|XP_003601202.1| chr1 3873262 3877679 +
3 domain predictions
 –
Lj1g3v1318290.1
n.a. PREDICTED: histone deacetylase 14-like [Glycine max] gi|356512844|ref|XP_003525125.1| chr1 16004793 16006108 -
3 domain predictions
 –
Lj1g3v1318340.1
n.a. Histone deacetylase [Medicago truncatula] gi|357519987|ref|XP_003630282.1| chr1 16010069 16014655 -
3 domain predictions
 –
Lj3g3v1261190.1
n.a. PREDICTED: histone deacetylase 8-like [Cicer arietinum] gi|502083416|ref|XP_004487453.1| chr3 16291594 16296179 -
3 domain predictions
 –
Lj3g3v2996000.1
n.a. Histone deacetylase 9 isoform 11 [Theobroma cacao] gi|508786277|gb|EOY33533.1| chr3 37381632 37387314 -
3 domain predictions
 –
Lj3g3v2996000.2
n.a. PREDICTED: histone deacetylase 9-like [Cicer arietinum] gi|502145712|ref|XP_004506146.1| chr3 37381632 37387314 -
3 domain predictions
 –
Lj4g3v1440790.1
n.a. PREDICTED: histone deacetylase 6-like [Glycine max] gi|356513715|ref|XP_003525556.1| chr4 22371597 22374851 +
3 domain predictions
 –
Lj4g3v1440870.1
n.a. PREDICTED: histone deacetylase 6-like [Glycine max] gi|356513715|ref|XP_003525556.1| chr4 22405558 22410111 +
3 domain predictions
 –
Lj4g3v1719690.1
n.a. PREDICTED: histone deacetylase 5-like [Glycine max] gi|356511847|ref|XP_003524633.1| chr4 24648565 24656436 +
3 domain predictions
 –
Lj4g3v1787130.1
n.a. PREDICTED: histone deacetylase 15-like [Glycine max] gi|356565230|ref|XP_003550845.1| chr4 25348426 25359865 -
3 domain predictions
 –
Lj4g3v1787130.2
n.a. PREDICTED: histone deacetylase 15-like [Glycine max] gi|356565230|ref|XP_003550845.1| chr4 25348426 25356680 -
3 domain predictions
 –
Lj4g3v1787130.3
n.a. PREDICTED: histone deacetylase 15-like [Cicer arietinum] gi|502151700|ref|XP_004508570.1| chr4 25348710 25359877 -
3 domain predictions
 –
Lj4g3v2742710.1
n.a. Histone deacetylase [Medicago truncatula] gi|357519987|ref|XP_003630282.1| chr4 36796735 36801321 +
3 domain predictions
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Lj5g3v0391470.1
n.a. PREDICTED: histone deacetylase 2-like [Cicer arietinum] gi|502125369|ref|XP_004498908.1| chr5 3675886 3681189 -
3 domain predictions
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LotjaGi1g1v0146200.1
n.a. Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200 LjG1.1_chr1 24763899 24771846 -
2 domain predictions
 –
LotjaGi1g1v0146200.2
n.a. Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200 LjG1.1_chr1 24763899 24771846 -
2 domain predictions
 –
LotjaGi1g1v0146200.3
n.a. Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200 LjG1.1_chr1 24764281 24771758 -
2 domain predictions
 –
LotjaGi1g1v0146200.4
n.a. Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200 LjG1.1_chr1 24764467 24771799 -
2 domain predictions
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LotjaGi1g1v0146200.5
n.a. Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200 LjG1.1_chr1 24764469 24771797 -
2 domain predictions
 –
LotjaGi1g1v0146200.6
n.a. Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|A0A151RPJ3|A0A151RPJ3_CAJCA Histone deacetylase; Found in the gene: LotjaGi1g1v0146200 LjG1.1_chr1 24767409 24770586 -
2 domain predictions
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LotjaGi1g1v0176200.1
n.a. Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|G7J4T5|G7J4T5_MEDTR Histone deacetylase; Found in the gene: LotjaGi1g1v0176200 LjG1.1_chr1 33810232 33815371 +
2 domain predictions
 –
LotjaGi1g1v0176200.2
n.a. Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|G7J4T5|G7J4T5_MEDTR Histone deacetylase; Found in the gene: LotjaGi1g1v0176200 LjG1.1_chr1 33810366 33815019 +
2 domain predictions
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LotjaGi3g1v0181900.1
n.a. Histone deacetylase family protein; TAIR: AT1G08460.1 histone deacetylase 8; Swiss-Prot: sp|Q94EJ2|HDA8_ARATH Histone deacetylase 8; TrEMBL-Plants: tr|Q2HSH7|Q2HSH7_MEDTR Histone deacetylase superfamily; Found in the gene: LotjaGi3g1v0181900 LjG1.1_chr3 25367365 25372268 -
2 domain predictions
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LotjaGi3g1v0479900.1
n.a. Histone deacetylase; TAIR: AT3G44680.1 histone deacetylase 9; Swiss-Prot: sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9; TrEMBL-Plants: tr|A0A151TNQ1|A0A151TNQ1_CAJCA Histone deacetylase; Found in the gene: LotjaGi3g1v0479900 LjG1.1_chr3 89694411 89700309 -
2 domain predictions
 –
LotjaGi3g1v0479900.2
n.a. Histone deacetylase; TAIR: AT3G44680.1 histone deacetylase 9; Swiss-Prot: sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9; TrEMBL-Plants: tr|A0A151TNQ1|A0A151TNQ1_CAJCA Histone deacetylase; Found in the gene: LotjaGi3g1v0479900 LjG1.1_chr3 89694897 89699752 -
2 domain predictions
 –
LotjaGi3g1v0479900.3
n.a. Histone deacetylase; TAIR: AT3G44680.1 histone deacetylase 9; Swiss-Prot: sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9; TrEMBL-Plants: tr|A0A151TNQ1|A0A151TNQ1_CAJCA Histone deacetylase; Found in the gene: LotjaGi3g1v0479900 LjG1.1_chr3 89694897 89699752 -
2 domain predictions
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LotjaGi3g1v0479900.4
n.a. Histone deacetylase; TAIR: AT3G44680.1 histone deacetylase 9; Swiss-Prot: sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9; TrEMBL-Plants: tr|A0A151TNQ1|A0A151TNQ1_CAJCA Histone deacetylase; Found in the gene: LotjaGi3g1v0479900 LjG1.1_chr3 89694897 89699752 -
2 domain predictions
 –
LotjaGi3g1v0479900.5
n.a. Histone deacetylase; TAIR: AT3G44680.1 histone deacetylase 9; Swiss-Prot: sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9; TrEMBL-Plants: tr|A0A151TNQ1|A0A151TNQ1_CAJCA Histone deacetylase; Found in the gene: LotjaGi3g1v0479900 LjG1.1_chr3 89695495 89699752 -
2 domain predictions
 –
LotjaGi4g1v0229800.1
n.a. Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0S3R6F7|A0A0S3R6F7_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0229800 LjG1.1_chr4 53980560 53996668 +
2 domain predictions
 –
LotjaGi4g1v0229800.2
n.a. Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0S3R6F7|A0A0S3R6F7_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0229800 LjG1.1_chr4 53980561 53996392 +
2 domain predictions
 –
LotjaGi4g1v0229800.3
n.a. Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0S3R6F7|A0A0S3R6F7_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0229800 LjG1.1_chr4 53980561 53996392 +
2 domain predictions
 –
LotjaGi4g1v0230000.1
n.a. Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0L9TQL1|A0A0L9TQL1_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0230000 LjG1.1_chr4 54011773 54016462 +
2 domain predictions
 –
LotjaGi4g1v0230000.2
n.a. Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0L9TQL1|A0A0L9TQL1_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0230000 LjG1.1_chr4 54011912 54015498 +
2 domain predictions
 –
LotjaGi4g1v0254400.1
n.a. Histone deacetylase; TAIR: AT5G61060.1 histone deacetylase 5; Swiss-Prot: sp|Q8RX28|HDA5_ARATH Histone deacetylase 5; TrEMBL-Plants: tr|I1JZJ1|I1JZJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0254400 LjG1.1_chr4 60853999 60862542 +
2 domain predictions
 –
LotjaGi4g1v0264100.1
n.a. Histone deacetylase; TAIR: AT3G18520.1 histone deacetylase 15; Swiss-Prot: sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15; TrEMBL-Plants: tr|A0A072UQH9|A0A072UQH9_MEDTR Histone deacetylase superfamily protein; Found in the gene: LotjaGi4g1v0264100 LjG1.1_chr4 62804756 62817095 -
2 domain predictions
 –
LotjaGi4g1v0264100.2
n.a. Histone deacetylase; TAIR: AT3G18520.1 histone deacetylase 15; Swiss-Prot: sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15; TrEMBL-Plants: tr|A0A072UQH9|A0A072UQH9_MEDTR Histone deacetylase superfamily protein; Found in the gene: LotjaGi4g1v0264100 LjG1.1_chr4 62804756 62817095 -
2 domain predictions
 –
LotjaGi4g1v0410000.1
n.a. Histone deacetylase, putative; TAIR: AT4G33470.1 histone deacetylase 14; Swiss-Prot: sp|Q941D6|HDA14_ARATH Histone deacetylase 14; TrEMBL-Plants: tr|I3SY87|I3SY87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0410000 LjG1.1_chr4 78601484 78605940 -
2 domain predictions
 –
LotjaGi4g1v0410000.2
n.a. Histone deacetylase, putative; TAIR: AT4G33470.1 histone deacetylase 14; Swiss-Prot: sp|Q941D6|HDA14_ARATH Histone deacetylase 14; TrEMBL-Plants: tr|I3SY87|I3SY87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0410000 LjG1.1_chr4 78601920 78603003 -
2 domain predictions
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LotjaGi5g1v0041400.1
n.a. Histone deacetylase, putative; TAIR: AT5G26040.2 histone deacetylase 2; Swiss-Prot: sp|Q944K3|HDA2_ARATH Histone deacetylase 2; TrEMBL-Plants: tr|I3S3T1|I3S3T1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0041400 LjG1.1_chr5 6955851 6961686 -
2 domain predictions
 –