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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2775620 |
| Transcript ID | Lj4g3v2775620.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 335 | 335 | 22.393 | ||
| Phobius | 1 | 15 | 15 | – | – | |
| Phobius | 1 | 1 | 1 | – | – | |
| SignalP | 1 | 16 | 16 | – | – | |
| Phobius | 2 | 10 | 9 | – | – | |
| Phobius | 11 | 15 | 5 | – | – | |
| PANTHER | 13 | 57 | 45 | 2.10E-54 | – | |
| PANTHER | 13 | 57 | 45 | 2.10E-54 | – | |
| Phobius | 16 | 340 | 325 | – | – | |
| SUPERFAMILY | 20 | 52 | 33 | 4.22E-37 | – | |
| Pfam | 59 | 332 | 274 | 1.40E-21 | ||
| SUPERFAMILY | 98 | 159 | 62 | 4.22E-37 | – | |
| PANTHER | 103 | 152 | 50 | 2.10E-54 | – | |
| PANTHER | 103 | 152 | 50 | 2.10E-54 | – | |
| PANTHER | 254 | 335 | 82 | 2.10E-54 | – | |
| PANTHER | 254 | 335 | 82 | 2.10E-54 | – | |
| SUPERFAMILY | 262 | 334 | 73 | 4.22E-37 | – | |
| ProSitePatterns | 263 | 280 | 18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of Lj4g3v2775620.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2775620.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.