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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2829990 |
| Transcript ID | Lj4g3v2829990.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Cicer arietinum] gi|502152788|ref|XP_004509094.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 490 | 487 | 2.20E-296 | – | |
| PANTHER | 4 | 490 | 487 | 2.20E-296 | – | |
| Pfam | 83 | 127 | 45 | 3.90E-07 | ||
| ProSiteProfiles | 147 | 177 | 31 | 7.52 | ||
| Pfam | 152 | 177 | 26 | 0.0019 | ||
| TIGRFAM | 153 | 179 | 27 | 6.70E-04 | ||
| ProSiteProfiles | 178 | 208 | 31 | 8.506 | ||
| Pfam | 180 | 206 | 27 | 8.10E-05 | ||
| TIGRFAM | 181 | 207 | 27 | 2.00E-04 | ||
| Gene3D | 181 | 247 | 67 | 8.90E-06 | ||
| Pfam | 211 | 257 | 47 | 7.40E-09 | ||
| ProSiteProfiles | 211 | 245 | 35 | 11.674 | ||
| TIGRFAM | 213 | 247 | 35 | 1.30E-07 | ||
| ProSiteProfiles | 281 | 311 | 31 | 8.035 | ||
| Gene3D | 282 | 350 | 69 | 8.90E-06 | ||
| TIGRFAM | 286 | 314 | 29 | 5.40E-04 | ||
| ProSiteProfiles | 312 | 346 | 35 | 12.891 | ||
| Pfam | 312 | 358 | 47 | 4.50E-13 | ||
| TIGRFAM | 314 | 347 | 34 | 1.00E-07 | ||
| ProSiteProfiles | 347 | 377 | 31 | 7.377 | ||
| TIGRFAM | 349 | 382 | 34 | 0.0013 | ||
| ProSiteProfiles | 383 | 413 | 31 | 7.103 | ||
| Pfam | 387 | 412 | 26 | 0.096 | ||
| ProSiteProfiles | 449 | 483 | 35 | 7.454 | ||
| Pfam | 485 | 609 | 125 | 7.80E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj4g3v2829990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2829990.1, powered by CORGI.
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