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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2963460 |
| Transcript ID | Lj4g3v2963460.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase-like [Cicer arietinum] gi|502139262|ref|XP_004503706.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 17 | 17 | – | – | |
| Phobius | 1 | 1 | 1 | – | – | |
| Phobius | 2 | 12 | 11 | – | – | |
| Phobius | 13 | 17 | 5 | – | – | |
| Phobius | 18 | 747 | 730 | – | – | |
| MobiDBLite | 41 | 65 | 25 | – | – | |
| Hamap | 223 | 723 | 501 | 26.448 | ||
| SUPERFAMILY | 224 | 324 | 101 | 1.44E-14 | ||
| PANTHER | 234 | 737 | 504 | 0 | – | |
| PANTHER | 234 | 737 | 504 | 0 | – | |
| Gene3D | 238 | 322 | 85 | 5.80E-16 | ||
| TIGRFAM | 245 | 724 | 480 | 1.40E-108 | ||
| Pfam | 246 | 321 | 76 | 1.80E-04 | ||
| SUPERFAMILY | 303 | 563 | 261 | 1.70E-44 | ||
| Gene3D | 324 | 555 | 232 | 1.80E-55 | ||
| Pfam | 333 | 531 | 199 | 9.50E-33 | ||
| Pfam | 552 | 636 | 85 | 2.60E-14 | ||
| SUPERFAMILY | 552 | 724 | 173 | 3.51E-33 | ||
| Gene3D | 556 | 717 | 162 | 5.50E-46 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Regulation of cell shape | Any process that modulates the surface configuration of a cell. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Ligase activity | Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. | ||
| Molecular function | Acid-amino acid ligase activity | Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. | ||
| Biological process | Cell division | The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. |
Expression pattern of Lj4g3v2963460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2963460.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.