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Lj4g3v2976880.1

Overview

Field Value
Gene ID Lj4g3v2976880
Transcript ID Lj4g3v2976880.1
Lotus japonicus genome version MG20 v3.0
Description POX family protein isoform 1 [Theobroma cacao] gi|508777567|gb|EOY24823.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00574
118 245 128 6.10E-45
IPR006563
PANTHER
PTHR11850
121 347 227 3.20E-139 –
PANTHER
PTHR11850:SF66
121 347 227 3.20E-139 –
Pfam
PF07526
123 242 120 7.00E-40
IPR006563
Coils
Coil
177 197 21 – –
ProSiteProfiles
PS50071
293 347 55 9.863
IPR001356
CDD
cd00086
296 347 52 1.50E-06 –
SUPERFAMILY
SSF46689
297 347 51 3.55E-11
IPR009057
Gene3D
G3DSA:1.10.10.60
299 347 49 1.40E-17
IPR009057
Pfam
PF05920
313 347 35 2.40E-11
IPR008422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj4g3v2976880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2976880.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.