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Lj4g3v3114680.1

Overview

Field Value
Gene ID Lj4g3v3114680
Transcript ID Lj4g3v3114680.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ras-related protein RABA6a-like [Glycine max] gi|356524680|ref|XP_003530956.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24073
2 217 216 1.70E-153 –
PANTHER
PTHR24073:SF486
2 217 216 1.70E-153 –
Gene3D
G3DSA:3.40.50.300
7 196 190 3.30E-68
IPR027417
ProSiteProfiles
PS51419
9 215 207 33.666 –
SUPERFAMILY
SSF52540
9 190 182 9.88E-58
IPR027417
CDD
cd01868
11 174 164 1.62E-105 –
SMART
SM00173
11 177 167 1.60E-21 –
TIGRFAM
TIGR00231
13 167 155 6.90E-32
IPR005225
PRINTS
PR00449
14 35 22 1.70E-39 –
SMART
SM00175
14 177 164 1.60E-102 –
Pfam
PF00071
15 175 161 7.90E-60
IPR001806
SMART
SM00174
16 177 162 1.20E-11 –
SMART
SM00176
19 202 184 3.80E-08 –
PRINTS
PR00449
37 53 17 1.70E-39 –
PRINTS
PR00449
55 77 23 1.70E-39 –
PRINTS
PR00449
117 130 14 1.70E-39 –
PRINTS
PR00449
152 174 23 1.70E-39 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj4g3v3114680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3114680.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.