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| Field | Value |
|---|---|
| Gene ID | Lj4g3v3116260 |
| Transcript ID | Lj4g3v3116260.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Cicer arietinum] gi|502105550|ref|XP_004492833.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 109 | 109 | 4.90E-255 | – | |
| PANTHER | 1 | 109 | 109 | 4.90E-255 | – | |
| ProSiteProfiles | 1 | 16 | 16 | 5.294 | ||
| ProSiteProfiles | 17 | 51 | 35 | 7.18 | ||
| ProSiteProfiles | 52 | 82 | 31 | 6.226 | ||
| Gene3D | 67 | 165 | 99 | 1.10E-05 | ||
| ProSiteProfiles | 83 | 117 | 35 | 10.874 | ||
| TIGRFAM | 85 | 115 | 31 | 6.90E-06 | ||
| Pfam | 113 | 156 | 44 | 1.80E-07 | ||
| ProSiteProfiles | 118 | 148 | 31 | 6.401 | ||
| PANTHER | 141 | 502 | 362 | 4.90E-255 | – | |
| PANTHER | 141 | 502 | 362 | 4.90E-255 | – | |
| ProSiteProfiles | 184 | 218 | 35 | 6.95 | ||
| Pfam | 189 | 209 | 21 | 0.66 | ||
| ProSiteProfiles | 223 | 253 | 31 | 8.473 | ||
| Pfam | 226 | 251 | 26 | 6.40E-06 | ||
| Gene3D | 226 | 253 | 28 | 1.10E-05 | ||
| TIGRFAM | 227 | 251 | 25 | 0.0024 | ||
| ProSiteProfiles | 258 | 292 | 35 | 7.596 | ||
| Gene3D | 290 | 320 | 31 | 1.10E-05 | ||
| ProSiteProfiles | 293 | 323 | 31 | 7.772 | ||
| Pfam | 298 | 320 | 23 | 0.12 | ||
| Pfam | 323 | 371 | 49 | 4.70E-10 | ||
| ProSiteProfiles | 324 | 358 | 35 | 11.192 | ||
| TIGRFAM | 327 | 360 | 34 | 1.30E-06 | ||
| ProSiteProfiles | 359 | 393 | 35 | 7.213 | ||
| Gene3D | 455 | 482 | 28 | 1.10E-05 | ||
| ProSiteProfiles | 461 | 495 | 35 | 8.079 | ||
| Pfam | 497 | 621 | 125 | 1.60E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj4g3v3116260.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v3116260.1, powered by CORGI.
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