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Lj5g3v0065670.1

Overview

Field Value
Gene ID Lj5g3v0065670
Transcript ID Lj5g3v0065670.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcriptional activator Myb-like [Cicer arietinum] gi|502132955|ref|XP_004501595.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641
7 186 180 2.40E-91 –
PANTHER
PTHR10641:SF611
7 186 180 2.40E-91 –
ProSiteProfiles
PS51294
31 86 56 26.734
IPR017930
SUPERFAMILY
SSF46689
33 129 97 3.38E-31
IPR009057
SMART
SM00717
35 84 50 1.70E-16
IPR001005
Pfam
PF00249
36 81 46 1.00E-17
IPR001005
Gene3D
G3DSA:1.10.10.60
37 89 53 1.80E-24
IPR009057
CDD
cd00167
38 80 43 1.14E-15 –
SMART
SM00717
87 135 49 4.80E-15
IPR001005
ProSiteProfiles
PS51294
88 137 50 19.93
IPR017930
Gene3D
G3DSA:1.10.10.60
90 136 47 4.90E-22
IPR009057
CDD
cd00167
90 133 44 6.70E-12 –
Pfam
PF00249
90 132 43 2.80E-14
IPR001005

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v0065670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0065670.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.