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Lj5g3v0108300.1

Overview

Field Value
Gene ID Lj5g3v0108300
Transcript ID Lj5g3v0108300.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: proteasome subunit alpha type-1-B-like [Cicer arietinum] gi|502126081|ref|XP_004499172.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11599:SF12
1 243 243 1.70E-151 –
PANTHER
PTHR11599
1 243 243 1.70E-151 –
Gene3D
G3DSA:3.60.20.10
3 235 233 3.00E-82
IPR029055
SUPERFAMILY
SSF56235
4 235 232 2.85E-72
IPR029055
Pfam
PF10584
6 28 23 3.70E-14
IPR000426
SMART
SM00948
6 28 23 4.50E-10
IPR000426
ProSitePatterns
PS00388
6 28 23 –
IPR000426
CDD
cd03749
6 215 210 1.81E-142 –
ProSiteProfiles
PS51475
21 232 212 75.197
IPR023332
Pfam
PF00227
29 214 186 1.10E-56
IPR001353
MobiDBLite
mobidb-lite
239 279 41 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004175
Molecular function Endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
Subterm of
GO:0004298
Molecular function Threonine-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
Subterm of
GO:0005839
Cellular component Proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
Subterm of
Part of
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0019773
Cellular component Proteasome core complex, alpha-subunit complex The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus.
Subterm of
Part of
GO:0051603
Biological process Proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
Subterm of
Part of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v0108300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0108300.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.