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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0196960 |
| Transcript ID | Lj5g3v0196960.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: probable cation transporter HKT6-like [Cicer arietinum] gi|502164358|ref|XP_004513135.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 50 | 50 | – | – | |
| PANTHER | 17 | 353 | 337 | 5.80E-114 | – | |
| Phobius | 51 | 74 | 24 | – | – | |
| TMHMM | 52 | 74 | 23 | – | – | |
| Phobius | 75 | 149 | 75 | – | – | |
| Pfam | 105 | 353 | 249 | 1.50E-20 | ||
| Phobius | 150 | 174 | 25 | – | – | |
| TMHMM | 151 | 173 | 23 | – | – | |
| Phobius | 175 | 193 | 19 | – | – | |
| Phobius | 194 | 212 | 19 | – | – | |
| Phobius | 213 | 223 | 11 | – | – | |
| Phobius | 224 | 247 | 24 | – | – | |
| TMHMM | 225 | 247 | 23 | – | – | |
| Phobius | 248 | 281 | 34 | – | – | |
| TMHMM | 280 | 302 | 23 | – | – | |
| Phobius | 282 | 302 | 21 | – | – | |
| Phobius | 303 | 333 | 31 | – | – | |
| Phobius | 334 | 352 | 19 | – | – | |
| TMHMM | 334 | 351 | 18 | – | – | |
| Phobius | 353 | 353 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj5g3v0196960.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0196960.1, powered by CORGI.
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