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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003445
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 11 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.257s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v0914190.1
n.a. PREDICTED: sodium transporter HKT1-like isoform X2 [Cicer arietinum] gi|502164287|ref|XP_004513110.1| chr2 14069777 14070922 +
2 domain predictions
3 GO terms
Lj2g3v0914260.1
n.a. PREDICTED: LOW QUALITY PROTEIN: probable cation transporter HKT6-like [Cicer arietinum] gi|502164358|ref|XP_004513135.1| chr2 14096467 14097528 -
2 domain predictions
3 GO terms
Lj2g3v0914290.1
n.a. PREDICTED: sodium transporter HKT1-like [Glycine max] gi|356545131|ref|XP_003540998.1| chr2 14118425 14122214 -
2 domain predictions
3 GO terms
Lj5g3v0196960.1
n.a. PREDICTED: LOW QUALITY PROTEIN: probable cation transporter HKT6-like [Cicer arietinum] gi|502164358|ref|XP_004513135.1| chr5 1806869 1807930 +
2 domain predictions
3 GO terms
Lj5g3v0196990.1
n.a. PREDICTED: sodium transporter HKT1-like [Glycine max] gi|356545131|ref|XP_003540998.1| chr5 1822132 1834658 -
2 domain predictions
3 GO terms
LotjaGi2g1v0234000.1
n.a. Sodium transporter; TAIR: AT4G10310.1 high-affinity K+ transporter 1; Swiss-Prot: sp|Q84TI7|HKT1_ARATH Sodium transporter HKT1; TrEMBL-Plants: tr|I3T0X2|I3T0X2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0234000 LjG1.1_chr2 69310553 69323419 +
2 domain predictions
3 GO terms
LotjaGi2g1v0234000.2
n.a. Sodium transporter; TAIR: AT4G10310.1 high-affinity K+ transporter 1; Swiss-Prot: sp|Q84TI7|HKT1_ARATH Sodium transporter HKT1; TrEMBL-Plants: tr|I3T0X2|I3T0X2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0234000 LjG1.1_chr2 69310862 69323418 +
2 domain predictions
3 GO terms
LotjaGi2g1v0234000.3
n.a. Sodium transporter; TAIR: AT4G10310.1 high-affinity K+ transporter 1; Swiss-Prot: sp|Q84TI7|HKT1_ARATH Sodium transporter HKT1; TrEMBL-Plants: tr|I3T0X2|I3T0X2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0234000 LjG1.1_chr2 69310864 69323388 +
2 domain predictions
3 GO terms
LotjaGi2g1v0234200.1
n.a. Sodium transporter; TAIR: AT4G10310.1 high-affinity K+ transporter 1; Swiss-Prot: sp|Q6H501|HKT6_ORYSJ Probable cation transporter HKT6; TrEMBL-Plants: tr|A0A072UBQ8|A0A072UBQ8_MEDTR High-affinity potassium transporter; Found in the gene: LotjaGi2g1v0234200 LjG1.1_chr2 69327006 69338905 -
2 domain predictions
3 GO terms
LotjaGi2g1v0234400.1
n.a. Sodium transporter; TAIR: AT4G10310.1 high-affinity K+ transporter 1; Swiss-Prot: sp|Q84TI7|HKT1_ARATH Sodium transporter HKT1; TrEMBL-Plants: tr|I3T0X2|I3T0X2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0234400 LjG1.1_chr2 69359304 69363204 -
2 domain predictions
3 GO terms
LotjaGi2g1v0234400.2
n.a. Sodium transporter; TAIR: AT4G10310.1 high-affinity K+ transporter 1; Swiss-Prot: sp|Q84TI7|HKT1_ARATH Sodium transporter HKT1; TrEMBL-Plants: tr|I3T0X2|I3T0X2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0234400 LjG1.1_chr2 69359353 69363538 -
2 domain predictions
3 GO terms