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Lj5g3v0297310.2

Overview

Field Value
Gene ID Lj5g3v0297310
Transcript ID Lj5g3v0297310.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Zinc finger, RING-type [Medicago truncatula] gi|87241421|gb|ABD33279.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12183
1 210 210 2.60E-111 –
Phobius
CYTOPLASMIC_DOMAIN
1 69 69 – –
PANTHER
PTHR12183:SF14
1 210 210 2.60E-111 –
Pfam
PF16041
2 86 85 1.30E-19
IPR032010
TMHMM
TMhelix
34 51 18 – –
TMHMM
TMhelix
66 88 23 – –
Phobius
TRANSMEMBRANE
70 88 19 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
89 210 122 – –
Gene3D
G3DSA:3.30.40.10
139 205 67 4.30E-12
IPR013083
SUPERFAMILY
SSF57850
145 204 60 1.02E-08 –
Pfam
PF13920
155 204 50 2.70E-15 –
SMART
SM00184
158 197 40 0.0016
IPR001841
ProSiteProfiles
PS50089
158 198 41 11.132
IPR001841
CDD
cd00162
158 201 44 7.50E-06 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj5g3v0297310.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0297310.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.