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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0405030 |
| Transcript ID | Lj5g3v0405030.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Delta-6-desaturase [Medicago truncatula] gi|357437417|ref|XP_003588984.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 333 | 333 | 1.70E-104 | ||
| PANTHER | 1 | 346 | 346 | 3.40E-228 | – | |
| PANTHER | 1 | 346 | 346 | 3.40E-228 | – | |
| Phobius | 1 | 11 | 11 | – | – | |
| TMHMM | 10 | 32 | 23 | – | – | |
| Phobius | 12 | 29 | 18 | – | – | |
| Phobius | 30 | 34 | 5 | – | – | |
| Phobius | 35 | 52 | 18 | – | – | |
| Pfam | 36 | 305 | 270 | 8.00E-35 | ||
| CDD | 39 | 301 | 263 | 2.80E-65 | – | |
| Phobius | 53 | 72 | 20 | – | – | |
| Phobius | 73 | 92 | 20 | – | – | |
| TMHMM | 73 | 90 | 18 | – | – | |
| Phobius | 93 | 111 | 19 | – | – | |
| Phobius | 112 | 131 | 20 | – | – | |
| Phobius | 132 | 151 | 20 | – | – | |
| TMHMM | 150 | 172 | 23 | – | – | |
| Phobius | 152 | 172 | 21 | – | – | |
| Phobius | 173 | 183 | 11 | – | – | |
| Phobius | 184 | 201 | 18 | – | – | |
| TMHMM | 184 | 206 | 23 | – | – | |
| Phobius | 202 | 207 | 6 | – | – | |
| Phobius | 208 | 227 | 20 | – | – | |
| Phobius | 228 | 346 | 119 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
Expression pattern of Lj5g3v0405030.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0405030.1, powered by CORGI.
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