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IPR012171 is a Fatty acid desaturase.
<p>This entry includes fatty acid desaturase family members from bacteria, fungi, plants and animals. Proteins in this family contain the fatty acid desaturase domain ([interpro:IPR005804]). The eukaryotic members, including human FADS1 and FADS2, are fusion proteins containing an N-terminal cytochrome b5-like domain and a C-terminal multiple membrane-spanning desaturase portion [[cite:PUB00074248]].</p> <p>Three human fatty acid desaturase genes have been identified, fatty acid desaturase 1-3 (FADS1-3) [[cite:PUB00074247]]. FADS1 and FADS2 encode delta-5 desaturase (D5D) and delta-6 desaturase (D6D) respectively. They are membrane-bound enzymes that catalyse the rate-limiting formation of endogenous long-chain polyunsaturated fatty acid (PUFA). FADS3 is a ceramide desaturase that produces sphinga-4,14-dienine-containing ceramides (SPD ceramides). FADS3 also acts as a methyl-end fatty acyl coenzyme A (CoA) desaturase that introduces a cis double bond between the preexisting double bond and the terminal methyl group of the fatty acyl chain. [[cite:PUB00095632]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: fatty acid desaturase 3-like [Glycine max] gi|356526912|ref|XP_003532059.1| | 17 | ||
– | Delta-6-desaturase [Medicago truncatula] gi|357437417|ref|XP_003588984.1| | 17 | ||
– | PREDICTED: fatty acid desaturase 3-like [Glycine max] gi|356526912|ref|XP_003532059.1| | 17 | ||
– | Fatty acid/sphingolipid desaturase [Theobroma cacao] gi|508703935|gb|EOX95831.1| | 17 | ||
– | Delta-6-desaturase [Medicago truncatula] gi|357437417|ref|XP_003588984.1| | 11 | ||
– | Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A061DUT1|A0A061DUT1_THECC Fatty acid/sphingolipid desaturase; Found in the gene: LotjaGi2g1v0305100 | 18 | ||
– | Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0176100 | 18 | ||
– | Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0176100 | 18 | ||
– | Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0176100 | 18 | ||
– | Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0184800 | 18 | ||
– | Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0184800 | 18 | ||
– | Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0184800 | 18 | ||
– | Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0184800 | 18 | ||
– | Desaturase; TAIR: AT3G61580.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|O04353|DES6_BOROF Acyl-lipid (9-3)-desaturase; TrEMBL-Plants: tr|G7I9X4|G7I9X4_MEDTR Fatty acid/sphingolipid desaturase; Found in the gene: LotjaGi5g1v0043300 | 18 | ||
– | Desaturase; TAIR: AT3G61580.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|O04353|DES6_BOROF Acyl-lipid (9-3)-desaturase; TrEMBL-Plants: tr|G7I9X4|G7I9X4_MEDTR Fatty acid/sphingolipid desaturase; Found in the gene: LotjaGi5g1v0043300 | 18 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
cd03506 | CDD | 1 | 6.67 |