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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0468090 |
| Transcript ID | Lj5g3v0468090.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial-like [Glycine max] gi|356522600|ref|XP_003529934.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 25 | 54 | 30 | 1.90E-247 | – | |
| PANTHER | 74 | 608 | 535 | 1.90E-247 | – | |
| ProSiteProfiles | 91 | 125 | 35 | 7.015 | ||
| Pfam | 96 | 122 | 27 | 0.19 | ||
| ProSiteProfiles | 162 | 196 | 35 | 6.204 | ||
| ProSiteProfiles | 197 | 227 | 31 | 5.207 | ||
| ProSiteProfiles | 228 | 262 | 35 | 7.969 | ||
| Pfam | 230 | 259 | 30 | 1.30E-04 | ||
| TIGRFAM | 230 | 259 | 30 | 6.50E-05 | ||
| ProSiteProfiles | 298 | 328 | 31 | 7.794 | ||
| Gene3D | 303 | 346 | 44 | 1.90E-06 | ||
| TIGRFAM | 303 | 331 | 29 | 4.90E-04 | ||
| ProSiteProfiles | 329 | 363 | 35 | 11.564 | ||
| Pfam | 329 | 375 | 47 | 1.40E-09 | ||
| TIGRFAM | 331 | 365 | 35 | 1.50E-07 | ||
| ProSiteProfiles | 399 | 429 | 31 | 6.073 | ||
| Gene3D | 402 | 471 | 70 | 1.90E-06 | ||
| Pfam | 404 | 424 | 21 | 0.0033 | ||
| Pfam | 429 | 477 | 49 | 5.40E-10 | ||
| ProSiteProfiles | 430 | 464 | 35 | 12.781 | ||
| TIGRFAM | 432 | 465 | 34 | 2.10E-07 | ||
| ProSiteProfiles | 465 | 495 | 31 | 6.106 | ||
| ProSiteProfiles | 501 | 531 | 31 | 8.232 | ||
| Pfam | 504 | 529 | 26 | 0.0031 | ||
| TIGRFAM | 505 | 528 | 24 | 0.0028 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v0468090.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0468090.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.