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Lj5g3v0469130.1

Overview

Field Value
Gene ID Lj5g3v0469130
Transcript ID Lj5g3v0469130.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: copper transporter 5-like [Cicer arietinum] gi|502125193|ref|XP_004498836.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 22 22 – –
PANTHER
PTHR12483:SF39
1 137 137 2.30E-52 –
ProSiteProfiles
PS51257
1 33 33 5 –
PANTHER
PTHR12483
1 137 137 2.30E-52
IPR007274
Pfam
PF04145
3 117 115 1.80E-21
IPR007274
TMHMM
TMhelix
21 43 23 – –
Phobius
TRANSMEMBRANE
23 43 21 – –
Phobius
CYTOPLASMIC_DOMAIN
44 74 31 – –
Phobius
TRANSMEMBRANE
75 95 21 – –
TMHMM
TMhelix
95 117 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
96 100 5 – –
Phobius
TRANSMEMBRANE
101 117 17 – –
Phobius
CYTOPLASMIC_DOMAIN
118 138 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005375
Molecular function Copper ion transmembrane transporter activity Enables the transfer of copper (Cu) ions from one side of a membrane to the other.
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0035434
Biological process Copper ion transmembrane transport The directed movement of copper cation across a membrane.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v0469130.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0469130.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.