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Lj5g3v0510800.1

Overview

Field Value
Gene ID Lj5g3v0510800
Transcript ID Lj5g3v0510800.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 200 200 1.30E-125
PANTHER 1 200 200 1.30E-125
Phobius 1 40 40
Gene3D 39 204 166 2.50E-11
Phobius 41 60 20
TMHMM 41 63 23
SUPERFAMILY 45 204 160 3.79E-11
Pfam 53 205 153 2.90E-36
Phobius 61 79 19
TMHMM 78 100 23
Phobius 80 100 21
Phobius 101 111 11
Phobius 112 131 20
TMHMM 112 131 20
Phobius 132 136 5
TMHMM 135 157 23
Phobius 137 157 21
Phobius 158 177 20
TMHMM 177 199 23
Phobius 178 198 21
Phobius 199 207 9

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj5g3v0510800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0510800.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.