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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0510990 |
| Transcript ID | Lj5g3v0510990.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Glycine max] gi|356552474|ref|XP_003544592.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 62 | 46 | 2.00E-191 | – | |
| PANTHER | 17 | 62 | 46 | 2.00E-191 | – | |
| Gene3D | 19 | 126 | 108 | 7.70E-09 | ||
| SUPERFAMILY | 19 | 124 | 106 | 3.30E-11 | – | |
| ProSiteProfiles | 60 | 119 | 60 | 11.855 | ||
| Pfam | 62 | 121 | 60 | 4.80E-08 | ||
| SUPERFAMILY | 177 | 339 | 163 | 8.05E-88 | – | |
| ProSiteProfiles | 181 | 524 | 344 | 54.824 | ||
| Pfam | 181 | 521 | 341 | 1.20E-50 | ||
| ProSitePatterns | 182 | 197 | 16 | – | ||
| PANTHER | 182 | 341 | 160 | 2.00E-191 | – | |
| PANTHER | 182 | 341 | 160 | 2.00E-191 | – | |
| PANTHER | 360 | 443 | 84 | 2.00E-191 | – | |
| PANTHER | 360 | 443 | 84 | 2.00E-191 | – | |
| SUPERFAMILY | 366 | 522 | 157 | 8.05E-88 | – | |
| PANTHER | 460 | 550 | 91 | 2.00E-191 | – | |
| PANTHER | 460 | 550 | 91 | 2.00E-191 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of Lj5g3v0510990.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0510990.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.