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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0551220 |
| Transcript ID | Lj5g3v0551220.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Embryo defective 2410 isoform 1 [Theobroma cacao] gi|508784096|gb|EOY31352.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 107 | 107 | – | – | |
| PANTHER | 3 | 2175 | 2173 | 0 | – | |
| PANTHER | 3 | 2175 | 2173 | 0 | – | |
| TMHMM | 107 | 129 | 23 | – | – | |
| Phobius | 108 | 128 | 21 | – | – | |
| Phobius | 129 | 2175 | 2047 | – | – | |
| MobiDBLite | 475 | 541 | 67 | – | – | |
| MobiDBLite | 1636 | 1656 | 21 | – | – | |
| Pfam | 1760 | 2159 | 400 | 3.70E-14 | ||
| MobiDBLite | 1830 | 1851 | 22 | – | – | |
| MobiDBLite | 1880 | 1902 | 23 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of plasma membrane | The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Protein secretion | The controlled release of proteins from a cell. |
Expression pattern of Lj5g3v0551220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0551220.1, powered by CORGI.
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