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Lj5g3v0659760.1

Overview

Field Value
Gene ID Lj5g3v0659760
Transcript ID Lj5g3v0659760.1
Lotus japonicus genome version MG20 v3.0
Description phenylalanine ammonia-lyase [Lotus japonicus] gi|118142402|dbj|BAF36976.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10362:SF19
17 732 716 0 –
PANTHER
PTHR10362
17 732 716 0 –
Gene3D
G3DSA:1.10.275.10
39 277 239 4.40E-92
IPR024083
TIGRFAM
TIGR01226
40 721 682 0
IPR005922
SUPERFAMILY
SSF48557
40 732 693 3.06E-259
IPR008948
CDD
cd00332
76 542 467 0
IPR001106
Pfam
PF00221
78 554 477 2.50E-151
IPR001106
ProSitePatterns
PS00488
214 230 17 –
IPR022313
Gene3D
G3DSA:1.20.200.10
278 550 273 7.70E-139 –
Gene3D
G3DSA:1.10.274.20
551 666 116 1.10E-60
IPR023144
Coils
Coil
606 626 21 – –
Gene3D
G3DSA:1.20.200.10
667 721 55 7.70E-139 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006559
Biological process L-phenylalanine catabolic process The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid.
Subterm of
GO:0016841
Molecular function Ammonia-lyase activity Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v0659760.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0659760.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.