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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0659940 |
| Transcript ID | Lj5g3v0659940.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | CNGC5-like protein [Medicago truncatula] gi|357440409|ref|XP_003590482.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 203 | 203 | 0 | – | |
| PANTHER | 1 | 203 | 203 | 0 | – | |
| Phobius | 1 | 16 | 16 | – | – | |
| SUPERFAMILY | 5 | 203 | 199 | 3.40E-30 | – | |
| Pfam | 14 | 333 | 320 | 8.60E-28 | ||
| Gene3D | 14 | 202 | 189 | 2.50E-18 | – | |
| TMHMM | 17 | 38 | 22 | – | – | |
| Phobius | 17 | 36 | 20 | – | – | |
| Phobius | 37 | 47 | 11 | – | – | |
| Phobius | 48 | 71 | 24 | – | – | |
| Phobius | 72 | 105 | 34 | – | – | |
| TMHMM | 106 | 128 | 23 | – | – | |
| Phobius | 106 | 127 | 22 | – | – | |
| Phobius | 128 | 138 | 11 | – | – | |
| Phobius | 139 | 156 | 18 | – | – | |
| TMHMM | 140 | 162 | 23 | – | – | |
| Phobius | 157 | 175 | 19 | – | – | |
| Phobius | 176 | 198 | 23 | – | – | |
| TMHMM | 177 | 199 | 23 | – | – | |
| Phobius | 199 | 301 | 103 | – | – | |
| PANTHER | 249 | 638 | 390 | 0 | – | |
| PANTHER | 249 | 638 | 390 | 0 | – | |
| SUPERFAMILY | 268 | 328 | 61 | 3.40E-30 | – | |
| Gene3D | 268 | 328 | 61 | 2.50E-18 | – | |
| TMHMM | 302 | 324 | 23 | – | – | |
| Phobius | 302 | 323 | 22 | – | – | |
| Phobius | 324 | 639 | 316 | – | – | |
| SUPERFAMILY | 336 | 526 | 191 | 6.08E-31 | ||
| Gene3D | 337 | 397 | 61 | 3.00E-11 | – | |
| Gene3D | 404 | 522 | 119 | 1.00E-25 | ||
| CDD | 406 | 525 | 120 | 3.83E-15 | – | |
| ProSiteProfiles | 406 | 491 | 86 | 13.338 | ||
| SMART | 406 | 537 | 132 | 5.70E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj5g3v0659940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0659940.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.