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Lj5g3v0670590.1

Overview

Field Value
Gene ID Lj5g3v0670590
Transcript ID Lj5g3v0670590.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ras-related protein RABC2a-like [Glycine max] gi|356533295|ref|XP_003535201.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
7 210 204 5.20E-65
IPR027417
PANTHER
PTHR24073
7 211 205 4.20E-143 –
PANTHER
PTHR24073:SF536
7 211 205 4.20E-143 –
ProSiteProfiles
PS51419
10 211 202 30.52 –
SUPERFAMILY
SSF52540
11 190 180 1.50E-54
IPR027417
SMART
SM00173
12 179 168 6.30E-26 –
TIGRFAM
TIGR00231
15 171 157 2.00E-28
IPR005225
SMART
SM00175
15 179 165 3.30E-90 –
PRINTS
PR00449
15 36 22 5.00E-35 –
CDD
cd01863
15 176 162 1.99E-90 –
Pfam
PF00071
16 177 162 7.00E-52
IPR001806
SMART
SM00174
17 179 163 2.10E-13 –
SMART
SM00176
20 207 188 9.80E-04 –
PRINTS
PR00449
37 53 17 5.00E-35 –
PRINTS
PR00449
55 77 23 5.00E-35 –
PRINTS
PR00449
119 132 14 5.00E-35 –
PRINTS
PR00449
154 176 23 5.00E-35 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj5g3v0670590.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0670590.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.