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Lj5g3v0747120.1

Overview

Field Value
Gene ID Lj5g3v0747120
Transcript ID Lj5g3v0747120.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Cicer arietinum] gi|502167494|ref|XP_004514158.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 120 120 – –
PANTHER
PTHR24031
68 597 530 0 –
PANTHER
PTHR24031:SF264
68 597 530 0 –
Gene3D
G3DSA:3.40.50.300
131 377 247 9.90E-87
IPR027417
ProSiteProfiles
PS51195
149 177 29 10.185
IPR014014
CDD
cd00268
151 365 215 3.77E-93 –
SMART
SM00487
168 379 212 1.60E-57
IPR014001
Pfam
PF00270
173 351 179 2.60E-49
IPR011545
ProSiteProfiles
PS51192
180 364 185 29.189
IPR014001
SUPERFAMILY
SSF52540
229 520 292 3.43E-74
IPR027417
CDD
cd00079
376 508 133 2.74E-38 –
Gene3D
G3DSA:3.40.50.300
378 538 161 6.40E-53
IPR027417
Pfam
PF00271
388 503 116 3.70E-30
IPR001650
ProSiteProfiles
PS51194
391 542 152 22.654
IPR001650
SMART
SM00490
422 503 82 1.40E-35
IPR001650
MobiDBLite
mobidb-lite
547 568 22 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 29

Expression data

Expression pattern

Expression pattern of Lj5g3v0747120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0747120.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.