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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0806320 |
| Transcript ID | Lj5g3v0806320.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | RecName: Full=Casparian strip membrane protein 1] gi|391738014|sp|P0DI55.1|CASP1_LOTJA |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 40 | 40 | – | – | |
| PANTHER | 2 | 197 | 196 | 1.40E-109 | – | |
| PANTHER | 2 | 197 | 196 | 1.40E-109 | – | |
| Pfam | 34 | 182 | 149 | 5.10E-42 | ||
| TIGRFAM | 41 | 193 | 153 | 1.10E-39 | ||
| TMHMM | 41 | 60 | 20 | – | – | |
| Phobius | 41 | 61 | 21 | – | – | |
| Phobius | 62 | 80 | 19 | – | – | |
| Phobius | 81 | 107 | 27 | – | – | |
| TMHMM | 86 | 108 | 23 | – | – | |
| Phobius | 108 | 118 | 11 | – | – | |
| Phobius | 119 | 146 | 28 | – | – | |
| TMHMM | 120 | 142 | 23 | – | – | |
| Phobius | 147 | 171 | 25 | – | – | |
| TMHMM | 172 | 194 | 23 | – | – | |
| Phobius | 172 | 194 | 23 | – | – | |
| Phobius | 195 | 197 | 3 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj5g3v0806320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0806320.1, powered by CORGI.
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