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Lj5g3v0817430.1

Overview

Field Value
Gene ID Lj5g3v0817430
Transcript ID Lj5g3v0817430.1
Lotus japonicus genome version MG20 v3.0
Description HAT family dimerization domain containing protein [Medicago truncatula] gi|357498113|ref|XP_003619345.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 49 49 – –
PANTHER
PTHR23272
46 104 59 1.20E-12 –
PANTHER
PTHR23272:SF52
46 104 59 1.20E-12 –
SMART
SM00614
47 98 52 6.70E-13
IPR003656
ProSiteProfiles
PS50808
47 112 66 11.497
IPR003656
SUPERFAMILY
SSF57667
50 96 47 5.83E-07 –
Pfam
PF02892
50 95 46 2.30E-09
IPR003656
Gene3D
G3DSA:3.90.1280.10
54 77 24 9.90E-04
IPR016154

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0051082
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v0817430.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0817430.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.