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Lj5g3v1135090.1

Overview

Field Value
Gene ID Lj5g3v1135090
Transcript ID Lj5g3v1135090.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: actin-related protein 9-like [Cicer arietinum] gi|502115892|ref|XP_004495311.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11937:SF13
5 58 54 3.80E-156
IPR027668
PANTHER
PTHR11937
5 58 54 3.80E-156
IPR004000
SMART
SM00268
18 580 563 2.00E-10
IPR004000
Gene3D
G3DSA:3.30.420.40
18 52 35 5.50E-22 –
SUPERFAMILY
SSF53067
18 50 33 9.93E-12 –
Pfam
PF00022
86 570 485 2.60E-24
IPR004000
MobiDBLite
mobidb-lite
131 159 29 – –
SUPERFAMILY
SSF53067
156 286 131 9.93E-12 –
Gene3D
G3DSA:3.30.420.40
160 322 163 5.50E-22 –
PANTHER
PTHR11937:SF13
164 414 251 3.80E-156
IPR027668
PANTHER
PTHR11937
164 414 251 3.80E-156
IPR004000
SUPERFAMILY
SSF53067
279 404 126 2.45E-35 –
SUPERFAMILY
SSF53067
465 572 108 2.45E-35 –
PANTHER
PTHR11937:SF13
468 570 103 3.80E-156
IPR027668
PANTHER
PTHR11937
468 570 103 3.80E-156
IPR004000
Gene3D
G3DSA:3.30.420.40
478 569 92 2.00E-09 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006338
Biological process Chromatin remodeling Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
Subterm of
GO:0031011
Cellular component Ino80 complex A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity.
Subterm of

Genome browser

LORE1 insertions 52

Expression data

Expression pattern

Expression pattern of Lj5g3v1135090.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1135090.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.