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Lj5g3v1208000.1

Overview

Field Value
Gene ID Lj5g3v1208000
Transcript ID Lj5g3v1208000.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ADP-ribosylation factor-like protein 5-like [Glycine max] gi|356576553|ref|XP_003556395.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00178
1 177 177 2.00E-19 –
SMART
SM00177
1 181 181 8.40E-82 –
PANTHER
PTHR11711
1 181 181 1.60E-123 –
PANTHER
PTHR11711:SF31
1 181 181 1.60E-123 –
Gene3D
G3DSA:3.40.50.300
2 177 176 1.40E-57
IPR027417
CDD
cd04153
3 176 174 3.09E-117 –
ProSiteProfiles
PS51417
11 177 167 22.547
IPR024156
Pfam
PF00025
14 176 163 3.50E-66
IPR006689
SUPERFAMILY
SSF52540
15 178 164 2.67E-50
IPR027417
TIGRFAM
TIGR00231
16 143 128 1.40E-22
IPR005225
SMART
SM00175
18 151 134 0.0094 –
PRINTS
PR00328
19 42 24 8.80E-19
IPR006689
PRINTS
PR00328
47 71 25 8.80E-19
IPR006689
PRINTS
PR00328
74 99 26 8.80E-19
IPR006689
PRINTS
PR00328
119 140 22 8.80E-19
IPR006689

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj5g3v1208000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1208000.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.