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Lj5g3v1259860.1

Overview

Field Value
Gene ID Lj5g3v1259860
Transcript ID Lj5g3v1259860.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 2-hydroxymuconic semialdehyde hydrolase-like [Glycine max] gi|356533695|ref|XP_003535395.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 23 23 – –
Phobius
TRANSMEMBRANE
24 47 24 – –
Phobius
CYTOPLASMIC_DOMAIN
48 282 235 – –
PANTHER
PTHR10992:SF881
158 348 191 1.80E-166 –
PANTHER
PTHR10992
158 348 191 1.80E-166 –
SUPERFAMILY
SSF53474
207 467 261 6.63E-40
IPR029058
Gene3D
G3DSA:3.40.50.1820
208 467 260 2.80E-41
IPR029058
Pfam
PF00561
212 320 109 1.90E-22
IPR000073
PRINTS
PR00111
240 255 16 1.30E-06
IPR000073
Phobius
TRANSMEMBRANE
283 301 19 – –
PRINTS
PR00111
286 299 14 1.30E-06
IPR000073
PRINTS
PR00111
300 313 14 1.30E-06
IPR000073
Phobius
NON_CYTOPLASMIC_DOMAIN
302 480 179 – –
PANTHER
PTHR10992
378 480 103 1.80E-166 –
PANTHER
PTHR10992:SF881
378 480 103 1.80E-166 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj5g3v1259860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1259860.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.