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Lj5g3v1275090.1

Overview

Field Value
Gene ID Lj5g3v1275090
Transcript ID Lj5g3v1275090.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
7 194 188 1.20E-69
IPR027417
PANTHER
PTHR24073
7 209 203 2.10E-154 –
PANTHER
PTHR24073:SF430
7 209 203 2.10E-154 –
SUPERFAMILY
SSF52540
10 185 176 1.83E-58
IPR027417
ProSiteProfiles
PS51419
10 215 206 34.411 –
CDD
cd01868
12 176 165 9.36E-113 –
SMART
SM00173
12 178 167 3.30E-26 –
TIGRFAM
TIGR00231
13 172 160 1.10E-37
IPR005225
SMART
SM00175
15 178 164 8.80E-104 –
PRINTS
PR00449
15 36 22 1.90E-40 –
Pfam
PF00071
16 176 161 1.10E-60
IPR001806
SMART
SM00174
17 178 162 1.30E-11 –
SMART
SM00176
20 215 196 5.20E-05 –
PRINTS
PR00449
38 54 17 1.90E-40 –
PRINTS
PR00449
56 78 23 1.90E-40 –
PRINTS
PR00449
118 131 14 1.90E-40 –
PRINTS
PR00449
153 175 23 1.90E-40 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v1275090.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1275090.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.