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Lj5g3v1301180.1

Overview

Field Value
Gene ID Lj5g3v1301180
Transcript ID Lj5g3v1301180.1
Lotus japonicus genome version MG20 v3.0
Description Os01g0100600 [Oryza sativa Japonica Group] gi|115433958|ref|NP_001041737.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR15672:SF16
1 278 278 1.50E-135 –
PANTHER
PTHR15672
1 278 278 1.50E-135 –
SMART
SM00393
10 88 79 4.80E-07
IPR001374
SUPERFAMILY
SSF82708
15 109 95 5.89E-20
IPR001374
CDD
cd02642
22 88 67 4.03E-16 –
ProSiteProfiles
PS51061
23 89 67 16.929
IPR001374
Pfam
PF01424
26 86 61 3.60E-17
IPR001374
Gene3D
G3DSA:3.30.1370.50
27 94 68 4.50E-18
IPR001374
ProSiteProfiles
PS51673
92 160 69 8.743
IPR024771
Pfam
PF12752
119 157 39 4.90E-08
IPR024771
MobiDBLite
mobidb-lite
193 321 129 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj5g3v1301180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1301180.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.