Domain Predictions — View

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SM00393

Source: SMART

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of GO:0097159 GO:1901363

Associated Lotus transcripts 9

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v4093200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	R3H domain-containing protein [Medicago truncatula] gi\|357509253\|ref\|XP_003624915.1\|	Domains G3DSA:3.30.1370.50 IPR001374 IPR024771 PF01424 PF12752 PS51061 PS51673 PTHR15672 PTHR15672:SF15 SM00393 SSF82708 cd02642 mobidb-lite	13
Lj2g3v3072950.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Glycine max] gi\|356499332\|ref\|XP_003518495.1\|	Domains G3DSA:1.25.40.20 G3DSA:3.30.1370.50 G3DSA:3.40.50.300 IPR001374 IPR001650 IPR007502 IPR011545 IPR011709 IPR014001 IPR020683 IPR027417 PF00270 PF00271 PF01424 PF04408 PF07717 PS50297 PS51061 PS51192 PS51194 PTHR18934 PTHR18934:SF115 SM00393 SM00487 SM00490 SM00847 SSF48403 SSF52540 SSF82708 cd00046 cd00079 cd00204 mobidb-lite	33
Lj5g3v1301180.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Os01g0100600 [Oryza sativa Japonica Group] gi\|115433958\|ref\|NP_001041737.1\|	Domains G3DSA:3.30.1370.50 IPR001374 IPR024771 PF01424 PF12752 PS51061 PS51673 PTHR15672 PTHR15672:SF16 SM00393 SSF82708 cd02642 mobidb-lite	13
Lj5g3v1774920.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: R3H domain-containing protein 2-like [Cicer arietinum] gi\|502118292\|ref\|XP_004496195.1\|	Domains Coil G3DSA:3.30.1370.50 IPR001374 IPR024771 PF01424 PF12752 PS51061 PS51673 PTHR15672 SM00393 SSF82708 cd02642 mobidb-lite	13
LotjaGi1g1v0046400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT2G30800.1 helicase in vascular tissue and tapetum; Swiss-Prot: sp\|F4INY4\|HVT1_ARATH DExH-box ATP-dependent RNA helicase DExH6; TrEMBL-Plants: tr\|K7KB99\|K7KB99_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0046400	Domains Coil G3DSA:1.20.120.1080 G3DSA:1.25.40.20 G3DSA:3.30.1370.50 G3DSA:3.40.50.300 IPR001374 IPR001650 IPR007502 IPR011545 IPR011709 IPR014001 IPR020683 IPR027417 IPR036770 IPR036867 PF00270 PF00271 PF01424 PF04408 PF07717 PS50297 PS51061 PS51192 PS51194 PTHR18934 PTHR18934:SF218 SM00393 SM00487 SM00490 SM00847 SSF48403 SSF52540 SSF82708 cd17917 cd18791 mobidb-lite	36
LotjaGi1g1v0658800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	R3h domain containing protein, putative; TAIR: AT3G56680.1 Single-stranded nucleic acid binding R3H protein; Swiss-Prot: sp\|A0JNC2\|R3HD2_BOVIN R3H domain-containing protein 2; TrEMBL-Plants: tr\|V7CXD9\|V7CXD9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0658800	Domains G3DSA:3.30.1370.50 IPR001374 IPR024771 IPR036867 PF01424 PF12752 PS51061 PS51673 PTHR15672 PTHR15672:SF15 SM00393 SSF82708 cd02642 mobidb-lite	14
LotjaGi5g1v0204000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	R3H domain protein; TAIR: AT3G56680.1 Single-stranded nucleic acid binding R3H protein; Swiss-Prot: sp\|Q8MSX1\|ENC_DROME Protein encore; TrEMBL-Plants: tr\|I1LBV3\|I1LBV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0204000	Domains G3DSA:3.30.1370.50 IPR001374 IPR024771 IPR036867 PF01424 PF12752 PS51061 PS51673 PTHR15672 PTHR15672:SF25 SM00393 SSF82708 cd02642 mobidb-lite	14
LotjaGi5g1v0267500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	R3h domain containing protein, putative; TAIR: AT3G56680.1 Single-stranded nucleic acid binding R3H protein; Swiss-Prot: sp\|Q9DCB4\|ARP21_MOUSE cAMP-regulated phosphoprotein 21; TrEMBL-Plants: tr\|A0A0B2NZL5\|A0A0B2NZL5_GLYSO R3H domain-containing protein 2; Found in the gene: LotjaGi5g1v0267500	Domains Coil G3DSA:3.30.1370.50 IPR001374 IPR024771 IPR036867 PF01424 PF12752 PS51061 PS51673 PTHR15672 PTHR15672:SF8 SM00393 SSF82708 cd02642 mobidb-lite	15
LotjaGi5g1v0267500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	R3h domain containing protein, putative; TAIR: AT3G56680.1 Single-stranded nucleic acid binding R3H protein; Swiss-Prot: sp\|Q80TM6\|R3HD2_MOUSE R3H domain-containing protein 2; TrEMBL-Plants: tr\|G7I367\|G7I367_MEDTR Single-stranded nucleic acid-binding protein R3H; Found in the gene: LotjaGi5g1v0267500	Domains G3DSA:3.30.1370.50 IPR001374 IPR024771 IPR036867 PF01424 PF12752 PS51061 PS51673 PTHR15672 PTHR15672:SF8 SM00393 SSF82708 cd02642 mobidb-lite	14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	11.11