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Lj5g3v1341890.1

Overview

Field Value
Gene ID Lj5g3v1341890
Transcript ID Lj5g3v1341890.1
Lotus japonicus genome version MG20 v3.0
Description catalytic subunit of protein phosphatase 1 [Vicia faba] gi|114213458|dbj|BAF31132.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11668:SF259
1 308 308 3.10E-263 –
PANTHER
PTHR11668
1 308 308 3.10E-263 –
CDD
cd07414
5 294 290 0 –
Pfam
PF16891
6 52 47 3.00E-24
IPR031675
Gene3D
G3DSA:3.60.21.10
9 308 300 2.70E-145
IPR029052
SUPERFAMILY
SSF56300
17 299 283 8.07E-119
IPR029052
SMART
SM00156
26 296 271 5.10E-172
IPR006186
Pfam
PF00149
54 245 192 1.80E-40
IPR004843
PRINTS
PR00114
54 81 28 1.30E-96
IPR006186
PRINTS
PR00114
83 110 28 1.30E-96
IPR006186
PRINTS
PR00114
116 140 25 1.30E-96
IPR006186
ProSitePatterns
PS00125
117 122 6 –
IPR006186
PRINTS
PR00114
150 176 27 1.30E-96
IPR006186
PRINTS
PR00114
179 206 28 1.30E-96
IPR006186
PRINTS
PR00114
236 256 21 1.30E-96
IPR006186
PRINTS
PR00114
258 274 17 1.30E-96
IPR006186

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj5g3v1341890.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1341890.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.