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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1355070 |
| Transcript ID | Lj5g3v1355070.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357441365|ref|XP_003590960.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 40 | 65 | 26 | – | – | |
| ProSiteProfiles | 84 | 118 | 35 | 7.267 | ||
| PANTHER | 88 | 579 | 492 | 0 | – | |
| PANTHER | 88 | 579 | 492 | 0 | – | |
| Gene3D | 93 | 206 | 114 | 6.00E-09 | ||
| TIGRFAM | 96 | 120 | 25 | 0.0013 | ||
| ProSiteProfiles | 119 | 149 | 31 | 7.585 | ||
| Pfam | 152 | 200 | 49 | 2.10E-17 | ||
| ProSiteProfiles | 153 | 187 | 35 | 13.461 | ||
| TIGRFAM | 156 | 189 | 34 | 7.60E-10 | ||
| ProSiteProfiles | 188 | 222 | 35 | 11.049 | ||
| TIGRFAM | 190 | 224 | 35 | 4.20E-06 | ||
| ProSiteProfiles | 223 | 257 | 35 | 10.753 | ||
| TIGRFAM | 225 | 258 | 34 | 5.20E-04 | ||
| Pfam | 238 | 271 | 34 | 1.60E-08 | ||
| ProSiteProfiles | 258 | 292 | 35 | 11.246 | ||
| TIGRFAM | 260 | 294 | 35 | 4.40E-05 | ||
| Pfam | 292 | 341 | 50 | 4.50E-17 | ||
| ProSiteProfiles | 293 | 327 | 35 | 12.134 | ||
| TIGRFAM | 295 | 329 | 35 | 2.30E-08 | ||
| ProSiteProfiles | 328 | 362 | 35 | 13.976 | ||
| TIGRFAM | 330 | 364 | 35 | 7.40E-10 | ||
| Pfam | 358 | 390 | 33 | 1.80E-10 | ||
| ProSiteProfiles | 363 | 397 | 35 | 12.836 | ||
| TIGRFAM | 365 | 399 | 35 | 2.00E-09 | ||
| Gene3D | 366 | 492 | 127 | 6.00E-09 | ||
| Pfam | 397 | 444 | 48 | 1.40E-12 | ||
| ProSiteProfiles | 398 | 432 | 35 | 12.923 | ||
| TIGRFAM | 400 | 434 | 35 | 3.00E-07 | ||
| ProSiteProfiles | 433 | 467 | 35 | 9.843 | ||
| Pfam | 467 | 516 | 50 | 7.60E-15 | ||
| ProSiteProfiles | 468 | 502 | 35 | 12.649 | ||
| TIGRFAM | 470 | 503 | 34 | 3.00E-09 | ||
| ProSiteProfiles | 503 | 537 | 35 | 11.235 | ||
| TIGRFAM | 505 | 539 | 35 | 1.20E-06 | ||
| ProSiteProfiles | 538 | 572 | 35 | 6.007 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v1355070.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1355070.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.