Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v1358160.1

Overview

Field	Value
Gene ID	Lj5g3v1358160
Transcript ID	Lj5g3v1358160.1
Related isoforms 1	Lj5g3v1358160.2
Lotus japonicus genome version	MG20 v3.0
Description	Transcriptional regulator ATRX [Medicago truncatula] gi\|357441417\|ref\|XP_003590986.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	36	36	–	–
PANTHER	PTHR10799:SF350 View details on PTHR10799:SF350 Search for proteins/transripts with this domain View external data on PTHR10799:SF350	22	28	7	6.60E-132	–
PANTHER	PTHR10799 View details on PTHR10799 Search for proteins/transripts with this domain View external data on PTHR10799	22	28	7	6.60E-132	–
PANTHER	PTHR10799:SF350 View details on PTHR10799:SF350 Search for proteins/transripts with this domain View external data on PTHR10799:SF350	46	120	75	6.60E-132	–
PANTHER	PTHR10799 View details on PTHR10799 Search for proteins/transripts with this domain View external data on PTHR10799	46	120	75	6.60E-132	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	49	76	28	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	107	134	28	–	–
PANTHER	PTHR10799 View details on PTHR10799 Search for proteins/transripts with this domain View external data on PTHR10799	269	341	73	6.60E-132	–
PANTHER	PTHR10799:SF350 View details on PTHR10799:SF350 Search for proteins/transripts with this domain View external data on PTHR10799:SF350	269	341	73	6.60E-132	–
PANTHER	PTHR10799:SF350 View details on PTHR10799:SF350 Search for proteins/transripts with this domain View external data on PTHR10799:SF350	424	456	33	6.60E-132	–
PANTHER	PTHR10799 View details on PTHR10799 Search for proteins/transripts with this domain View external data on PTHR10799	424	456	33	6.60E-132	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	426	456	31	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	472	503	32	–	–
PANTHER	PTHR10799:SF350 View details on PTHR10799:SF350 Search for proteins/transripts with this domain View external data on PTHR10799:SF350	510	733	224	6.60E-132	–
PANTHER	PTHR10799 View details on PTHR10799 Search for proteins/transripts with this domain View external data on PTHR10799	510	733	224	6.60E-132	–
SUPERFAMILY	SSF52540 View details on SSF52540 Search for proteins/transripts with this domain View external data on SSF52540	591	822	232	2.79E-40	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.300 View details on G3DSA:3.40.50.300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.300	599	805	207	4.10E-15	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00487 View details on SM00487 Search for proteins/transripts with this domain View external data on SM00487	602	822	221	4.30E-21	IPR014001 Show description in modal box View details on IPR014001 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00176 View details on PF00176 Search for proteins/transripts with this domain View external data on PF00176	625	822	198	6.80E-36	IPR000330 Show description in modal box View details on IPR000330 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51192 View details on PS51192 Search for proteins/transripts with this domain View external data on PS51192	628	811	184	16.111	IPR014001 Show description in modal box View details on IPR014001 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00046 View details on cd00046 Search for proteins/transripts with this domain View external data on cd00046	636	793	158	1.67E-12	–
PANTHER	PTHR10799:SF350 View details on PTHR10799:SF350 Search for proteins/transripts with this domain View external data on PTHR10799:SF350	749	822	74	6.60E-132	–
PANTHER	PTHR10799 View details on PTHR10799 Search for proteins/transripts with this domain View external data on PTHR10799	749	822	74	6.60E-132	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of View details of GO:0008144 View details of GO:0032559 View details of GO:0035639

Genome browser

Expression data

Expression pattern

Expression pattern of Lj5g3v1358160.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1358160.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.