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Lj5g3v1484550.2

Overview

Field	Value
Gene ID	Lj5g3v1484550
Transcript ID	Lj5g3v1484550.2
Related isoforms 1	Lj5g3v1484550.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi\|356576771\|ref\|XP_003556503.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.90.1300.10 View details on G3DSA:3.90.1300.10 Search for proteins/transripts with this domain View external data on G3DSA:3.90.1300.10	14	380	367	6.80E-81	IPR023631 Show description in modal box View details on IPR023631 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF75304 View details on SSF75304 Search for proteins/transripts with this domain View external data on SSF75304	15	380	366	6.28E-77	IPR023631 Show description in modal box View details on IPR023631 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR11895:SF39 View details on PTHR11895:SF39 Search for proteins/transripts with this domain View external data on PTHR11895:SF39	16	380	365	4.30E-166	–
PANTHER	PTHR11895 View details on PTHR11895 Search for proteins/transripts with this domain View external data on PTHR11895	16	380	365	4.30E-166	IPR000120 Show description in modal box View details on IPR000120 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01425 View details on PF01425 Search for proteins/transripts with this domain View external data on PF01425	16	380	365	4.40E-52	IPR023631 Show description in modal box View details on IPR023631 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00571 View details on PS00571 Search for proteins/transripts with this domain View external data on PS00571	88	119	32	–	IPR020556 Show description in modal box View details on IPR020556 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004040 View details of GO:0004040 AmiGO InterPro QuickGO	Molecular function	Amidase activity	Catalysis of the reaction: a monocarboxylic acid amide + H2O = a monocarboxylate + NH3.	Subterm of View details of GO:0016811

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj5g3v1484550.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1484550.2, powered by CORGI.

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