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Lj5g3v1562120.1

Overview

Field Value
Gene ID Lj5g3v1562120
Transcript ID Lj5g3v1562120.1
Lotus japonicus genome version MG20 v3.0
Description R2R3MYB transcription factor, partial [Lotus japonicus] gi|388330300|gb|AFK29428.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641
1 158 158 7.40E-115 –
MobiDBLite
mobidb-lite
1 26 26 – –
PANTHER
PTHR10641:SF494
1 158 158 7.40E-115 –
Gene3D
G3DSA:1.10.10.60
21 77 57 1.10E-20
IPR009057
ProSiteProfiles
PS51294
22 74 53 15.606
IPR017930
SUPERFAMILY
SSF46689
24 121 98 8.78E-30
IPR009057
SMART
SM00717
26 76 51 1.60E-12
IPR001005
Pfam
PF00249
27 74 48 1.10E-13
IPR001005
CDD
cd00167
29 74 46 2.11E-08 –
ProSiteProfiles
PS51294
75 129 55 23.594
IPR017930
Gene3D
G3DSA:1.10.10.60
78 127 50 3.00E-22
IPR009057
SMART
SM00717
79 127 49 2.90E-14
IPR001005
Pfam
PF00249
80 123 44 2.30E-14
IPR001005
CDD
cd00167
84 123 40 7.44E-10 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj5g3v1562120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1562120.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.