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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1563130 |
| Transcript ID | Lj5g3v1563130.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial-like [Glycine max] gi|356495741|ref|XP_003516732.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 366 | 366 | 4.50E-246 | – | |
| PANTHER | 1 | 366 | 366 | 4.50E-246 | – | |
| ProSiteProfiles | 10 | 44 | 35 | 7.706 | ||
| Pfam | 18 | 42 | 25 | 0.75 | ||
| ProSiteProfiles | 45 | 75 | 31 | 5.831 | ||
| Gene3D | 54 | 317 | 264 | 5.90E-10 | ||
| SUPERFAMILY | 63 | 144 | 82 | 1.28E-07 | – | |
| ProSiteProfiles | 79 | 113 | 35 | 10.49 | ||
| TIGRFAM | 82 | 114 | 33 | 2.00E-07 | ||
| Pfam | 82 | 111 | 30 | 9.60E-05 | ||
| Pfam | 114 | 162 | 49 | 1.90E-16 | ||
| ProSiteProfiles | 114 | 148 | 35 | 13.439 | ||
| TIGRFAM | 117 | 150 | 34 | 1.60E-09 | ||
| ProSiteProfiles | 149 | 183 | 35 | 11.586 | ||
| TIGRFAM | 151 | 185 | 35 | 7.50E-08 | ||
| SUPERFAMILY | 183 | 324 | 142 | 1.28E-07 | – | |
| Pfam | 183 | 225 | 43 | 3.70E-16 | ||
| ProSiteProfiles | 184 | 218 | 35 | 14.074 | ||
| TIGRFAM | 186 | 220 | 35 | 1.30E-11 | ||
| ProSiteProfiles | 219 | 253 | 35 | 9.054 | ||
| Pfam | 253 | 302 | 50 | 1.60E-15 | ||
| ProSiteProfiles | 254 | 288 | 35 | 11.4 | ||
| TIGRFAM | 256 | 289 | 34 | 8.40E-07 | ||
| ProSiteProfiles | 289 | 324 | 36 | 13.285 | ||
| TIGRFAM | 292 | 324 | 33 | 1.30E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v1563130.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1563130.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.