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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1602380 |
| Transcript ID | Lj5g3v1602380.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable polygalacturonase-like [Glycine max] gi|356501888|ref|XP_003519755.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 21 | 21 | – | – | |
| SignalP | 1 | 18 | 18 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| SignalP | 1 | 16 | 16 | – | – | |
| Phobius | 1 | 21 | 21 | – | – | |
| Phobius | 4 | 17 | 14 | – | – | |
| Phobius | 18 | 21 | 4 | – | – | |
| Phobius | 22 | 277 | 256 | – | – | |
| SUPERFAMILY | 26 | 275 | 250 | 2.14E-62 | ||
| PANTHER | 32 | 277 | 246 | 3.30E-182 | – | |
| PANTHER | 32 | 277 | 246 | 3.30E-182 | – | |
| Gene3D | 34 | 276 | 243 | 2.00E-70 | ||
| Pfam | 131 | 257 | 127 | 4.90E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of Lj5g3v1602380.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1602380.1, powered by CORGI.
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