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Lj5g3v1682500.1

Overview

Field Value
Gene ID Lj5g3v1682500
Transcript ID Lj5g3v1682500.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ATP-dependent helicase rhp16-like isoform X1 [Cicer arietinum] gi|502145992|ref|XP_004506272.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 113 113 – –
PANTHER
PTHR10799:SF763
18 63 46 4.90E-151 –
PANTHER
PTHR10799
18 63 46 4.90E-151 –
PANTHER
PTHR10799:SF763
143 337 195 4.90E-151 –
PANTHER
PTHR10799
143 337 195 4.90E-151 –
SUPERFAMILY
SSF52540
167 337 171 5.58E-44
IPR027417
Gene3D
G3DSA:3.40.50.300
201 335 135 9.20E-32
IPR027417
SMART
SM00487
203 493 291 2.20E-25
IPR014001
ProSiteProfiles
PS51192
220 475 256 16.161
IPR014001
Pfam
PF00176
223 478 256 6.10E-51
IPR000330
CDD
cd00046
227 457 231 2.06E-08 –
PANTHER
PTHR10799
412 482 71 4.90E-151 –
PANTHER
PTHR10799:SF763
412 482 71 4.90E-151 –
SUPERFAMILY
SSF52540
412 478 67 5.58E-44
IPR027417
Gene3D
G3DSA:3.40.50.300
413 477 65 9.20E-32
IPR027417
PANTHER
PTHR10799
512 521 10 4.90E-151 –
PANTHER
PTHR10799:SF763
512 521 10 4.90E-151 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj5g3v1682500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1682500.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.