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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1697440 |
| Transcript ID | Lj5g3v1697440.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | RecName: Full=Putative E3 ubiquitin-protein ligase LIN-1; AltName: Full=Protein cerberus] gi|353558931|sp|C6L7U1.2|LIN1_LOTJA |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 159 | 159 | 2.20E-71 | – | |
| Phobius | 1 | 2 | 2 | – | – | |
| Phobius | 1 | 18 | 18 | – | – | |
| PANTHER | 1 | 159 | 159 | 2.20E-71 | – | |
| Phobius | 3 | 14 | 12 | – | – | |
| Phobius | 15 | 18 | 4 | – | – | |
| Phobius | 19 | 497 | 479 | – | – | |
| Coils | 125 | 145 | 21 | – | – | |
| Gene3D | 198 | 496 | 299 | 6.60E-31 | ||
| SMART | 206 | 244 | 39 | 0.4 | ||
| ProSiteProfiles | 215 | 295 | 81 | 13.527 | ||
| Pfam | 229 | 244 | 16 | 0.041 | ||
| SUPERFAMILY | 229 | 496 | 268 | 9.42E-33 | ||
| PRINTS | 231 | 245 | 15 | 5.60E-06 | ||
| ProSitePatterns | 231 | 245 | 15 | – | ||
| ProSiteProfiles | 231 | 244 | 14 | 8.604 | ||
| SMART | 249 | 286 | 38 | 8.80E-05 | ||
| ProSiteProfiles | 256 | 289 | 34 | 10.174 | ||
| Pfam | 257 | 285 | 29 | 0.001 | ||
| PRINTS | 273 | 287 | 15 | 5.60E-06 | ||
| SMART | 454 | 495 | 42 | 0.025 | ||
| ProSiteProfiles | 463 | 497 | 35 | 10.258 | ||
| ProSiteProfiles | 463 | 497 | 35 | 10.642 | ||
| Pfam | 465 | 494 | 30 | 0.04 | ||
| PRINTS | 482 | 496 | 15 | 5.60E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v1697440.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1697440.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.