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Lj5g3v1698940.1

Overview

Field Value
Gene ID Lj5g3v1698940
Transcript ID Lj5g3v1698940.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ras-related protein RABC2a-like [Glycine max] gi|356576370|ref|XP_003556305.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24073:SF536
8 212 205 1.10E-121 –
PANTHER
PTHR24073
8 212 205 1.10E-121 –
Gene3D
G3DSA:3.40.50.300
9 211 203 4.30E-63
IPR027417
SUPERFAMILY
SSF52540
11 200 190 1.81E-54
IPR027417
ProSiteProfiles
PS51419
11 212 202 30.034 –
SMART
SM00173
13 182 170 3.00E-24 –
TIGRFAM
TIGR00231
14 173 160 4.30E-28
IPR005225
SMART
SM00175
16 182 167 3.10E-83 –
PRINTS
PR00449
16 37 22 1.50E-33 –
CDD
cd01863
16 179 164 1.03E-88 –
Pfam
PF00071
17 179 163 4.90E-50
IPR001806
SMART
SM00174
18 182 165 1.80E-11 –
SMART
SM00176
21 212 192 0.0032 –
PRINTS
PR00449
40 56 17 1.50E-33 –
PRINTS
PR00449
58 80 23 1.50E-33 –
PRINTS
PR00449
122 135 14 1.50E-33 –
PRINTS
PR00449
157 179 23 1.50E-33 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 35

Expression data

Expression pattern

Expression pattern of Lj5g3v1698940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1698940.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.